Visualization
with Cytoscape

Slides: http://tutorials.cytoscape.org


John "Scooter" Morris

EBI Single Cell Workshop
April 26-30 2021

Warning...

  • Too much material for 2 hours!
  • I've included some slides for reference
Advanced Visualization and Challenges Visualizing Groups in Cytoscape Hands-on Custom Graphics 10 Simple Rules...
Advanced Visualization and Challenges Visualizing Groups in Cytoscape Hands-on Custom Graphics 10 Simple Rules... Your Visualization Challenges
Advanced Visualization and Challenges Visualizing Groups in Cytoscape Hands-on Custom Graphics 10 Simple Rules... Your Visualization Challenges

Hands-on Custom Graphics

Custom Graphics Protocol
Advanced Visualization and Challenges Visualizing Groups in Cytoscape Hands-on Custom Graphics 10 Simple Rules... Your Visualization Challenges
Advanced Visualization and Challenges Visualizing Groups in Cytoscape Hands-on Custom Graphics 10 Simple Rules... Your Visualization Challenges

Visualization Challenges

Use these datasets or your own dataset to try out what you've learned!

Transcriptomics Dataset

Sample data set: BRCA.exp.547.med.txt: TCGA Breast Cancer expression data

Proteomics Dataset

Sample data set: JX_90min_prot.txt: Protein prospector output